PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_49759.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 121aa    MW: 13605.4 Da    PI: 10.7122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_49759.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-1677121149
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 
                              + ++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa a+++a
  Rsa1.0_49759.1_g00001.1  77 CSFRGVRQRI-WGKWVAEIREP---N-RgSRLWLGTFPTAEQAACAYVEA 121
                              579****998.**********8...3.35******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1077121IPR001471AP2/ERF domain
CDDcd000181.11E-1977121No hitNo description
SMARTSM003801.3E-1478121IPR001471AP2/ERF domain
PROSITE profilePS5103218.54578121IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1578120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-2278121IPR001471AP2/ERF domain
PRINTSPR003675.3E-107990IPR001471AP2/ERF domain
PRINTSPR003675.3E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAVYAHSGDI NCSRLDTSRK RKSRSRRDGT TVAERLQVWK DYNDNVEEAS TKKRKVPAKG  60
SKKGCMKGKG GPENGQCSFR GVRQRIWGKW VAEIREPNRG SRLWLGTFPT AEQAACAYVE  120
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871157.13e-58DRE-binding protein 2A
SwissprotO821324e-56DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLD7LYE13e-58D7LYE1_ARALL; DRE-binding protein 2A
STRINGfgenesh2_kg.6__469__AT5G05410.18e-58(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.29e-51DRE-binding protein 2A